Center for Computational Research

User Guide 9

• Prospective Users: Start Here
• Beginners Guide: New Users Start Here
• Advanced User Information
• Tutorials, Workshops and Training Documents
• Virtual Workshops

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CCR Policies 14

• Accounts and Data Retention Policy
• Batch Scheduler Policy
• Data Backup Policy
• Email Communications Policy
• External Co-Location Policy

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Accounts 20

• Account creation or access errors
• Account verification emails
• Accounts for RPCI Researchers
• Alternatives to using smartphone apps for one-time token generation
• Change or reset your password

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Accessing CCR Resources 11

• Creating a SSH tunnel using MobaXterm on Windows
• Data Transfer Options
• How do I login to CCR?
• How do I logout?
• How to login & transfer files from MacOS

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Cluster Computing 72

• Account updates and group name changes - summer 2019
• Advanced Certificate in Computational Science
• Basic UNIX Commands
• Batch Computing (SLURM Workload Manager)
• Changing your default cluster

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ColdFront - Resource Allocation Management Portal 21

• Adding Users to your Project or Allocation
• Allocation Change Requests
• Allocation Expiration
• Creating a new Project
• Creating a project for a course group

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Container Computing - Singularity 6

• Container Computing with Singularity
• Docker
• Error when using Docker entrypoint script with Singularity
• How to generate an API key for NVIDIA containers
• Running NVIDIA GPU Containers on the CCR clusters

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Globus - File Transfer Service 5

• Creating a share and sharing it with users
• Globus Command Line Interface (CLI)
• Globus: connecting to CCR endpoint and browsing your files
• Setting up a personal endpoint on a desktop and transferring files.
• Sharing data through Globus with a non-UB user

Lake Effect Cloud Computing 28

• What is Lake Effect (UB's Research Cloud)?
• Use and Misuse of Lake Effect
• Step by Step Guide to Lake Effect
• Cloud Access and Subscriptions
• Lake Effect Instance Types

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OnDemand 29

• Can't launch OnDemand interactive session
• CCR OnDemand Portal
• Configuring your environment and private modules for use in OnDemand
• Custom Jupyter Notebook Environment Setup
• Delete a Running OnDemand Desktop Session

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Storage 7

• Backup Restore Requests
• Can I buy more storage?
• How do I check my quotas?
• Panasas scratch storage usage and policies
• Storage Options

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Software 56

• Abaqus
• Amber
• ANSYS (CFX, Fluent, Mechanical, ICEMCFD)
• Bioinformatics-related applications
• BLAST

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Open XDMoD 7

• UB Metrics on Demand (Open XDMoD)
• Logging into Open XDMoD
• How to view Job efficiency
• How to edit charts
• Metric Explorer

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General Information 1

• Frequently Asked Questions

GDW Policies 5

• Archival Procedures (GDW)
• Procedures for New Work Requests
• Release Candidate Test/Release Procedures (GDW)
• Reporting Issues, Feedback, & Response Procedures (GDW)
• Workflow to Generate Variants Procedures (GDW)