R is a software environment for statistical computing and graphics.

Category:  Bioinformatics/Statistics

Availability: Open access for all academic users


Usage Notes

To show the software versions:  module avail R

Loading the module will set the path and any necessary variables:  module load R/version

Rmpi, an interface to MPI (Message-Passing Interface), is available with versions of R 2.11.1 and greater.  A sample SLURM script is in the /util/academic/R directory.

R manuals can be found here

See below for a presentation on R and Rmpi



Additional Information

Numerous add-on packages for R have been installed. A complete list for a given version may be viewed using the following command:
  cat $R_DIR/PkgList.txt

To install an R package in user (or projects) space:
  R CMD INSTALL -l /path/to/user/space/rlibs package

To load an R pacakge from user (or projects) space:
  library(package, lib.loc="/path/to/user/space/rlibs/")