Software

Detailed information about software packages installed on the CCR clusters. NOTE: You can search for a topic or field of science to look for packages useful in those areas. Example: using the keyword "bioinformatics" will list out all the software installed at CCR specifically used for bioinformatics-related research

Abaqus
  Abaqus is a finite element analysis and multiphysics suite for simulation. Category:  Engineering Availability: Abaqus is a licensed product and ...
Thu, Mar 22, 2018 at 9:06 AM
Amber
  AMBER (Assisted Model Building and Energy Refinement) is a suite of programs designed to carry out molecular dynamics simulations, particularly on bio...
Thu, Dec 3, 2015 at 3:11 PM
ANSYS (CFX, Fluent, Mechanical, ICEMCFD)
  ANSYS is a leading commercial vendor of software for engineering simulations. The software is a comprehensive suite for simulating and predicting the beh...
Wed, Jan 24, 2018 at 1:35 PM
Bioinformatics-related applications
Below is a list of the software applications installed at CCR and used in various bioinformatics & genomics disciplines.  We do not maintain documentati...
Mon, Sep 11, 2017 at 2:18 PM
BLAST
  BLAST (Basic Local Alignment Search Tool) finds regions of local similarity between sequences. Category:  Bioinfomatics Availability: Open ...
Fri, Dec 4, 2015 at 1:57 PM
CHARMM
  CHARMM (Chemistry at HARvard Macromolecular Mechanics) is a program for macromolecular dynamics and mechanics. Category:  Chemistry/Biochemist...
Wed, Apr 20, 2016 at 7:34 AM
COMSOL
  COMSOL is a multi-physics simulation suite. Category:  Engineering Availability: COMSOL is a licensed product and may not be available to all CCR...
Wed, Jan 24, 2018 at 1:31 PM
CUDA
  CUDA is a parallel computing platform and programming model invented by NVIDIA for GPUs (graphic processing unit). Category:  Compiler ...
Mon, Dec 7, 2015 at 10:09 AM
Dalton
  Dalton is a molecular electronic structure program. Category:  Chemistry Availability:  Open access for all academic users   The Dal...
Mon, Dec 7, 2015 at 10:18 AM
DDT
  DDT is a distributed debugging tool with an intuitive GUI and support for MPI, OpenMP, and CUDA. It is now part of the Allinea Forge product. Ca...
Thu, Sep 21, 2017 at 11:31 AM