Software

Detailed information about software packages installed on the CCR clusters. NOTE: You can search for a topic or field of science to look for packages useful in those areas. Example: using the keyword "bioinformatics" will list out all the software installed at CCR specifically used for bioinformatics-related research

MATLAB Distributed Computing Server (MDCS)
What is the Matlab Distributed Computing Server? The MATLAB Distributed Computing Server (MDCS) allows users to submit  (from within MATLAB) sequential or...
Tue, Jan 26, 2021 at 3:58 PM
MATLAB Neural Network Toolbox
The MATLAB Neural Network Toolbox is available on the CCR cluster.   Any academic user can access this toolbox.  There are many tutorials and examples on th...
Wed, Jan 24, 2018 at 1:41 PM
MATLAB Parallel Computing Toolbox (PCT)
The MATLAB Parallel Computing Toolbox (PCT) lets you solve computationally and data-intensive problems using multicore processors, GPUs, and computer clust...
Fri, Jul 26, 2019 at 11:24 AM
miRdSNP
A database of disease-associated SNPs and microRNA target sites on 3'UTRs of human genes Category: Bioinformatics Availa...
Wed, Dec 16, 2015 at 2:52 PM
Module Files Change Log
Date: December 16, 2020 New Modules:         matlab/R2020b Date: December 15, 2020 Deprecated Modules:         matlab/R2014b         matlab/R201...
Wed, Dec 16, 2020 at 5:07 PM
MPI Multi-threaded parallel computing software
MPI is the Message Passing Interface specification.  Several implementations of MPI are available.  OpenMP is an application programming interface (API) int...
Wed, May 4, 2016 at 12:15 PM
MVAPICH2
MVAPICH2 is an implementation of MPI (v2.x) for Infiniband. Category: MPI Availability: Open access for all users WARNING:...
Wed, Dec 16, 2015 at 3:04 PM
NAMD
  NAMD is a molecular dynamics program for the simulation of large biomolecular systems. Category:  Biochemistry Availability: Open access fo...
Fri, Dec 18, 2015 at 1:48 PM
NWChem
  NWChem is a massively parallel software package with a wide array of computational chemistry functionality, for both QM, QM/MM calculations. Cat...
Fri, Dec 18, 2015 at 2:28 PM
OpenMP
OpenMP is an application programming interface (API) intended for directing multi-threaded shared memory parallelism. Category:  Multi-threading  A...
Mon, Dec 21, 2015 at 10:18 AM